Publications

Kris Sankaran, Saritha Kodikara, Jingyi Jessica Li, Kim-Anh Lê Cao (2024). Semisynthetic Simulation for Microbiome Data Analysis. bioRxiv.

Saritha Kodikara, Kim-Anh Lê Cao (2024). Microbial network inference for longitudinal microbiome studies with LUPINE. bioRxiv.

Carolina Gubert, Chloe Jane Love, Saritha Kodikara, Jamie Jie Mei Liew, Thibault Renoir, Kim-Anh Lê Cao, Anthony J. Hannan (2022). Microbiota DNA isolation, 16S rRNA amplicon sequencing, and bioinformatic analysis for bacterial microbiome profiling of rodent fecal samples. STAR protocols.

Carolina Gubert, Jocelyn M Choo, Chloe Jane Love, Saritha Kodikara, Bethany A Masson, Jamie Jie Mei Liew, Yiwen Wang, Geraldine Kong, Vinod K Narayana, Thibault Renoir, Kim-Anh Lê Cao, Geraint B Rogers, Anthony J. Hannan (2022). Faecal microbiota transplant ameliorates gut dysbiosis and cognitive deficits in Huntington’s disease mice. Brain Communications}.

Saritha Kodikara, Susan Ellul, Kim-Anh Lê Cao (2022). Statistical challenges in longitudinal microbiome data analysis. Briefings in Bioinformatics.

Carolina Gubert, Chloe Jane Love, Saritha Kodikara, Jamie Jie Mei Liew, Thibault Renoir, Kim-Anh Lê Cao, Anthony J. Hannan (2022). Gene-environment-gut interactions in Huntington's disease mice are associated with environmental modulation of the gut microbiome. Iscience.

Saritha Kodikara, Haydar Demirhan, Yan Wang, Lewi Stone (2020). Inferring extinction date of a species using non‐homogeneous Poisson processes with a change‐point. Methods in Ecology and Evolution.

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Saritha Kodikara, Haydar Demirhan, Yan Wang, Andrew Solow, Lewi Stone (2020). Inferring extinction year using a Bayesian approach. Methods in Ecology and Evolution.

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Colin J.Thompson, Saritha Kodikara, Mark A.Burgman, Haydar Demirhan, Lewi Stone (2020). Using survival theory models to quantify extinctions. Biological Conservation.

Colin J.Thompson, Saritha Kodikara, Mark A.Burgman, Haydar Demirhan, Lewi Stone (2019). Bayesian updating to estimate extinction from sequential observation data. Biological Conservation.

Saritha Kodikara, Haydar Demirhan, Lewi Stone (2018). Inferring about the extinction of a species using certain and uncertain sightings. Journal of theoretical biology.